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WIP: Update dependencies

Created by: mlasak

In preparation to #2880 we started to cleanup and update the dependencies (prod and dev).

Feedback very welcome!

What has been done so far and what we're still doing:

What has to be done before merging

  • test new dep versions on macOS
  • test new dep versions on Windows
  • get feedback from community
  • all current functional tests / manual tests must pass

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